Gene Validator

      identifies problems with gene predictions, based on the similarities to genes in public databases


Validation results for solenopsys.fasta:

Click to sort! No. Description No. Hits Valid Length(Cluster) Valid Length(Rank) Valid Reading Frame Gene Merge(slope) Duplication Main ORF Test Multiple Alignment Test Overall Evaluation
! 1 SI2.2.0_06267 locus=Si_gnF.scaffold02592[1282609..1284114].pep_2 Solenopsis invicta quality=100.00 78 199 [1556, 1814] no 0.0 (TOO_SHORT) yes (0:78;) no (slope=0.0) no (pval=1.0) - In progress... ...
! 2 SI2.2.0_13722 locus=Si_gnF.scaffold06207[1925625..1928536].pep_1 Solenopsis invicta quality=100.00 15 186 [130, 161] no 0.0 (TOO_LONG) yes (0:15;) no (slope=0.03) no (pval=1.0) - In progress... ...
! 3 SI2.2.0_02651 locus=Si_gnF.scaffold01722[932834..938174].pep_2 Solenopsis invicta quality=100.00 tag=gw_corrected 500 660 [375, 1500] yes 0.13 (TOO_SHORT) yes (0:678;) no (slope=0.26) no (pval=1.0) - In progress... ...
! 4 SI2.2.0_02806 locus=Si_gnF.scaffold10535[2353440..2360510].pep_2 Solenopsis invicta quality=99.23 358 1808 [113, 501] no 0.18 (TOO_LONG) yes (0:456;) no (slope=0.24) no (pval=1.0) - In progress... ...
! 5 SI2.2.0_06704 locus=Si_gnF.scaffold07337[1292..1661].pep_2 Solenopsis invicta quality=100.00 34 90 [497, 726] no 0.06 (TOO_SHORT) yes (0:34;) no (slope=0.18) no (pval=1.0) - In progress... ...
! 6 SI2.2.0_02565 locus=Si_gnF.scaffold10535[2342913..2350141].pep_2 Solenopsis invicta quality=99.83 433 1761 [113, 1307] no 0.28 (OK) yes (0:538;) no (slope=0.32) no (pval=1.0) - In progress... ...
✓ 7 SI2.2.0_08867 locus=Si_gnF.scaffold04785[379014..382580].pep_1 Solenopsis invicta quality=100.00 tag=gw_corrected 500 759 [161, 829] yes 0.37 (OK) yes (0:550;) no (slope=0.2) no (pval=1.0) - In progress... ...
✓ 8 SI2.2.0_80754 locus=Si_gnF.scaffold00759[239873..255409].pep_2 flag=new_id Solenopsis invicta quality=28.95 merge_with=SI2.2.0_04333 tag=gw_corrected 500 850 [850, 885] yes 0.27 (OK) yes (0:503;) no (slope=-0.04) no (pval=1.0) - In progress... ...
! 9 SI2.2.0_80039 locus=Si_gnF.scaffold05277[1187..2156].pep_2 flag=new_id Solenopsis invicta quality=43.33 merge_with=SI2.2.0_80211 merge_with=SI2.2.0_80306 merge_with=SI2.2.0_07731 38 125 [119, 566] yes 0.03 (TOO_SHORT) yes (0:38;) no (slope=-0.02) no (pval=1.0) - In progress... ...
! 10 SI2.2.0_80300 locus=Si_gnF.scaffold01122[2700425..2705014].pep_1 flag=new_id Solenopsis invicta quality=76.92 merge_with=SI2.2.0_04351 tag=gw_corrected 127 1065 [510, 825] no 0.09 (TOO_LONG) yes (0:150;) no (slope=-0.18) no (pval=1.0) - In progress... ...