Gene Validator

identifies problems with gene predictions, based on similarities to genes in public databases


Validation results for one_direction_gene_merge_proteins.fasta:


1 100%
GB10034-PA (amel_OGSv1.0_pep.fa_34) 246 554 [390, 800] 0.44 0:283; slope=0.4 pval=1.0 0% missing, 2% extra
2 67%
GB10040-PA (amel_OGSv1.0_pep.fa_40) 500 1070 [496, 1012] 0.19 (TOO_LONG) 0:924; slope=0.02 pval=1.0 8% missing, 1% extra
3 100%
GB10056-PA 436 339 [106, 387] 0.28 0:436; slope=0.02 pval=1.0 1% missing, 1% extra
4 83%
GB10058-PA 500 1052 [1099, 1329] 0.37 0:906; slope=-0.03 pval=1.0 7% missing, 0% extra
5 100%
GB10063-PA 500 615 [510, 724] 0.37 0:835; slope=-0.01 pval=0.18 0% missing, 0% extra
6 50%
GB10071-PA 500 494 [335, 485] 0.04 (TOO_LONG) 0:702; slope=0.71 pval=1.0 0% missing, 0% extra
7 100%
GB10091-PA 404 708 [68, 867] 0.48 0:419; slope=0.06 pval=1.0 1% missing, 0% extra
8 83%
GB10098-PA 500 826 [681, 978] 0.4 0:507; slope=0.08 pval=1.0 21% missing, 0% extra
9 50%
GB10113-PA 422 659 [51, 595] 0.16 (TOO_LONG) 0:536; slope=0.45 pval=1.0 3% missing, 6% extra
10 67%
SI2.2.0_02565 locus=Si_gnF.scaffold10535[2342913..2350141].pep_2 quality=99.83 (SI2.2.3_proteins.fa_35) 430 1761 [113, 900] 0.28 0:535; slope=0.32 pval=1.0 Not enough evidence
11 50%
SI2.2.0_07054 locus=Si_gnF.scaffold08475[8186..10205].pep_2 quality=100.00 84 640 [107, 492] 0.15 (TOO_LONG) 0:86; slope=0.79 pval=1.0 13% missing, 2% extra
12 83%
SI2.2.0_02651 locus=Si_gnF.scaffold01722[932834..938174].pep_2 quality=100.00 tag=gw_corrected 500 660 [375, 1500] 0.13 (TOO_SHORT) 0:680; slope=0.29 pval=1.0 2% missing, 3% extra
13 67%
PB26730-RA protein AED:1 QI:0|0|0|0|0|0|10|0|347 131 347 [330, 446] 0.37 0:156; slope=0.48 pval=1.0 10% missing, 25% extra
14 17%
Or13a-like-1 protein AED:1 QI:0|0|0|0|0|0|23|0|774 140 774 [292, 553] 0.04 (TOO_LONG) 0:223; slope=0.71 pval=0.01 4% missing, 38% extra
15 50%
PB18762-RA protein AED:1 QI:0|0|0|0|0|0|2|0|207 500 207 [218, 298] 0.07 (TOO_SHORT) 0:649; slope=0.68 pval=1.0 17% missing, 0% extra
16 67%
Pbar_fem-RF protein AED:1 QI:325|0|0|0|0|0|10|42|452 396 452 [162, 196] 0.03 (TOO_LONG) 0:396; slope=0.2 pval=1.0 2% missing, 6% extra
17 33%
PB18775-RA protein AED:1 QI:0|0|0|0|0|0|17|0|1160 500 1160 [625, 826] 0.0 (TOO_LONG) 0:687; slope=0.21 pval=0.02 8% missing, 39% extra
18 83%
PB11933-RA protein AED:1 QI:0|0|0|0|0|0|8|0|845 500 845 [439, 1615] 0.45 0:815; slope=0.48 pval=1.0 10% missing, 0% extra
19 100%
PB13750-RA protein AED:1 QI:198|0|0|0|0|0|12|764|974 500 974 [845, 1005] 0.37 0:961; slope=0.01 pval=1.0 6% missing, 0% extra
20 100%
PB13758-RA protein AED:1 QI:0|0|0|0|0|0|14|0|751 500 751 [156, 1134] 0.42 0:1083; slope=0.2 pval=1.0 17% missing, 0% extra
21 83%
PB20127-RA protein AED:1 QI:0|0|0|0|0|0|8|0|679 444 679 [474, 721] 0.11 (TOO_LONG) 0:655; slope=0.16 pval=1.0 10% missing, 6% extra
22 50%
PB18752-RA protein AED:1 QI:0|0|0|0|0|0|13|0|794 500 794 [564, 679] 0.02 (TOO_LONG) 0:500; slope=-0.2 pval=1.0 Not enough evidence
23 83%
PB18768-RA protein AED:1 QI:187|0|0|0|0|0|2|127|132 289 132 [104, 175] 0.34 0:289; slope=-0.11 pval=1.0 60% missing, 0% extra