Gene Validator beta

Identify Problems with Gene Predictions



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1 88%
GB10034-PA (amel_OGSv1.0_pep.fa_34) 200 554 [597, 885] 0.41 slope=0.0 pval=1.0 0% missing, 2% extra, 100% conserved
2 100%
GB10040-PA (amel_OGSv1.0_pep.fa_40) 200 1070 [724, 1301] 0.48 slope=0.0 pval=1.0 8% missing, 1% extra, 100% conserved
3 100%
GB10056-PA 199 339 [333, 382] 0.45 slope=-0.44 pval=1.0 1% missing, 1% extra, 100% conserved
4 88%
GB10058-PA 200 1052 [1115, 1286] 0.35 slope=-0.03 pval=1.0 7% missing, 0% extra, 97% conserved
5 75%
GB10063-PA 199 615 [583, 601] 0.16 (too long) slope=0.0 pval=1.0 0% missing, 0% extra, 100% conserved
6 75%
GB10071-PA 199 494 [414, 469] 0.06 (too long) slope=0.0 pval=1.0 0% missing, 0% extra, 99% conserved
7 100%
GB10091-PA 198 708 [665, 841] 0.36 slope=-0.15 pval=1.0 2% missing, 1% extra, 99% conserved
8 50%
GB10098-PA 200 826 [1044, 1074] 0.18 (too short) slope=-0.01 pval=1.0 21% missing, 0% extra, 80% conserved
9 100%
GB10113-PA 200 659 [390, 773] 0.21 slope=0.0 pval=1.0 3% missing, 6% extra, 100% conserved
10 0%
sp|P83011|13KDA_SCYCA 13.2 kDa protein (Fragment) OS=Scyliorhinus canicula PE=1 SV=1 0 Not enough evidence Not enough evidence Not enough evidence Not enough evidence Not enough evidence
11 75%
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit OS=Propionibacterium freudenreichii subsp. shermanii PE=1 SV=3 199 611 [508, 517] 0.0 (too long) slope=0.0 pval=1.0 0% missing, 14% extra, 100% conserved
12 100%
SI2.2.0_02565 locus=Si_gnF.scaffold10535[2342913..2350141].pep_2 quality=99.83 (SI2.2.3_proteins.fa_35) 198 1761 [1539, 2169] 0.42 slope=-0.68 pval=1.0 4% missing, 3% extra, 94% conserved
13 63%
SI2.2.0_07054 locus=Si_gnF.scaffold08475[8186..10205].pep_2 quality=100.00 199 640 [86, 376] 0.22 slope=0.51 pval=1.0 14% missing, 3% extra, 100% conserved
14 88%
SI2.2.0_02651 locus=Si_gnF.scaffold01722[932834..938174].pep_2 quality=100.00 tag=gw_corrected 200 660 [827, 1102] 0.21 slope=-0.42 pval=1.0 1% missing, 4% extra, 96% conserved
15 75%
PB26730-RA protein AED:1 QI:0|0|0|0|0|0|10|0|347 200 347 [330, 422] 0.33 slope=0.21 pval=1.0 8% missing, 25% extra, 50% conserved
16 25%
Or13a-like-1 protein AED:1 QI:0|0|0|0|0|0|23|0|774 200 774 [292, 472] 0.04 (too long) slope=-0.13 pval=0.0 4% missing, 36% extra, 100% conserved
17 75%
PB18762-RA protein AED:1 QI:0|0|0|0|0|0|2|0|207 200 207 [218, 388] 0.06 (too short) slope=0.0 pval=1.0 17% missing, 0% extra, 84% conserved
18 75%
Pbar_fem-RF protein AED:1 QI:325|0|0|0|0|0|10|42|452 200 452 [64, 267] 0.07 (too long) slope=0.04 pval=1.0 2% missing, 6% extra, 99% conserved
19 50%
PB18775-RA protein AED:1 QI:0|0|0|0|0|0|17|0|1160 200 1160 [673, 747] 0.0 (too long) slope=0.0 pval=1.0 9% missing, 39% extra, 96% conserved
20 100%
PB11933-RA protein AED:1 QI:0|0|0|0|0|0|8|0|845 200 845 [637, 1311] 0.49 slope=0.02 pval=1.0 10% missing, 0% extra, 91% conserved
21 100%
PB13750-RA protein AED:1 QI:198|0|0|0|0|0|12|764|974 200 974 [884, 980] 0.21 slope=0.0 pval=1.0 6% missing, 0% extra, 88% conserved
22 75%
PB13758-RA protein AED:1 QI:0|0|0|0|0|0|14|0|751 200 751 [829, 864] 0.07 (too short) slope=0.0 pval=1.0 17% missing, 0% extra, 94% conserved
23 75%
PB20127-RA protein AED:1 QI:0|0|0|0|0|0|8|0|679 200 679 [589, 647] 0.17 (too long) slope=0.0 pval=1.0 13% missing, 6% extra, 100% conserved
24 75%
PB18752-RA protein AED:1 QI:0|0|0|0|0|0|13|0|794 200 794 [654, 690] 0.01 (too long) slope=0.0 pval=1.0 0% missing, 9% extra, 99% conserved
25 75%
PB18768-RA protein AED:1 QI:187|0|0|0|0|0|2|127|132 200 132 [104, 144] 0.44 slope=0.0 pval=1.0 60% missing, 0% extra, 100% conserved